ExSan++
Thu Jul 23 09:53:12 2015
exsan.plusplus@gmail.com https://twitter.com/#!/ExSan_com
JOB: basic_dna_5312
Data File: c:\exsan\exsan_data\DNA_FA_0001.txt
1st_line TAAACAAGCAGTAGTAATTCCTGCTTTATCAAGATAATTTTTCGACTCATCAGAAATATCCGAAAGTGTTAACTTCTGCGTCATGGAAGCGATAAAACTC
size strand 100
total strands 1000
last_line B@DFEFFFGEGGGFGHHHGGFGFGFIHGEGEHGHHGHGGEHBHF@HCIHEHEGHGGGCFGGBHHIHHGHFHHFGDJJDGIFHGKHGGFG>GHDFIFGEED
size strand 100
Basis
WORKSHEET A[10, 10] CHAR
A B C D E F G H I J
>------------------------------<
1: T A A A C A A G C A
2: G T A G T A A T T C
3: C T G C T T T A T C
4: A A G A T A A T T T
5: T T C G A C T C A T
6: C A G A A A T A T C
7: C G A A A G T G T T
8: A A C T T C T G C G
9: T C A T G G A A G C
10: G A T A A A A C T C
<------------------------------>
WORKSHEET B[10, 10] CHAR
A B C D E F G H I J
>------------------------------<
1: A A C A A G C A G T
2: A G T A A T T C C T
3: G C T T T A T C A A
4: G A T A A T T T T T
5: C G A C T C A T C A
6: G A A A T A T A C G
7: A A A G T G T T A A
8: C T T C T G C G T C
9: A T G G A C A C G A
10: A A A A A C T C C C
<------------------------------>
WORKSHEET 999[10, 10]
A B C D E F G H I J
>------------------------------<
1: G C G G C G C A A C
2: C T G T G A C G A C
3: A A A T C T G C T C
4: A A A T T T A T G C
5: G C G C T T C G A T
6: A A A A A T G A T T
7: G G C G T A T C C A
8: A C C T G C A G A G
9: T T T T A T C G C T
10: T C C A T G A C G C
<------------------------------>
WORKSHEET 1000[10, 10]
A B C D E F G H I J
>------------------------------<
1: C G A G C T G C G C
2: A A G G A T A G G T
3: C G A A T T T T C T
4: C A T T T T C C G C
5: C A G C A G T C C A
6: C T T C G A T T T A
7: A T T C G T A A A C
8: A A G C A G T A G T
9: A A T T C C T G C T
10: T T A T C A A G A T
<------------------------------>
Qualities
WORKSHEET A[10, 10] PIX
A B C D E F G H I J
>------------------------------<
1: 33 31 35 37 36 37 37 37 38 36
2: 38 38 38 39 36 39 38 39 38 39
3: 38 38 38 38 39 40 37 38 37 40
4: 37 39 40 34 37 38 39 38 39 38
5: 41 38 39 37 38 39 38 40 39 36
6: 39 38 38 39 41 38 37 36 37 39
7: 38 39 36 38 38 39 39 38 39 40
8: 37 38 37 38 35 40 37 38 38 37
9: 38 38 38 37 39 38 38 38 39 38
10: 38 38 32 38 40 37 38 38 34 38
<------------------------------>
WORKSHEET B[10, 10] PIX
A B C D E F G H I J
>------------------------------<
1: 28 31 31 34 36 33 37 31 33 38
2: 33 38 21 38 37 16 36 27 15 19
3: 34 18 36 22 36 13 24 38 28 39
4: 27 39 25 39 39 26 39 33 39 26
5: 38 21 24 37 22 11 22 35 38 7
6: 7 36 38 23 32 23 11 12 20 12
7: 23 11 30 11 11 11 32 36 29 34
8: 11 33 30 11 11 11 21 19 3 32
9: 34 6 10 6 28 6 10 19 6 18
10: 9 19 10 36 18 17 17 9 6 7
<------------------------------>
WORKSHEET 999[10, 10]
A B C D E F G H I J
>------------------------------<
1: 14 31 35 34 31 33 37 35 38 33
2: 38 31 38 21 36 29 32 33 38 39
3: 38 37 37 38 35 40 38 38 37 37
4: 36 39 37 35 39 38 11 37 33 36
5: 38 34 36 35 31 39 38 37 39 36
6: 32 36 35 39 38 38 22 33 37 32
7: 23 22 30 38 22 30 37 36 35 37
8: 39 29 35 38 21 40 33 38 38 37
9: 19 34 38 29 34 38 38 36 35 35
10: 38 38 38 17 18 24 30 34 26 31
<------------------------------>
WORKSHEET 1000[10, 10]
A B C D E F G H I J
>------------------------------<
1: 33 31 35 37 36 37 37 37 38 36
2: 38 38 38 37 38 39 39 39 38 38
3: 37 38 37 38 37 40 39 38 36 38
4: 36 39 38 39 39 38 39 38 38 36
5: 39 33 39 37 31 39 34 40 39 36
6: 39 36 38 39 38 38 38 34 37 38
7: 38 33 39 39 40 39 39 38 39 37
8: 39 39 37 38 35 41 41 35 38 40
9: 37 39 38 42 39 38 38 37 38 29
10: 38 39 35 37 40 37 38 36 36 35
<------------------------------>
Total counter = 100000
n_A = 28426 n_C = 21890 n_G = 19147 n_T = 30531 n_N = 6 total: 100000 ***n_GC = 41037
% A: 28.43 C: 21.89 G: 19.15 T: 30.53 N: 0.006
check-sum-> 1
Qualities min = 0 max = 43 range: 43
delta_Q: 43
Histogram of Qualities( 0 <--> 43 ):
0.046% 0 - 4 :
0.552% 4 - 8 :
1.472% 8 - 12 : *
1.487% 12 - 17 : *
1.861% 17 - 21 : *
2.231% 21 - 25 : **
9.051% 25 - 30 : *********
63.4% 30 - 34 : ***************************************************************
19.83% 34 - 38 : *******************
0.07% 38 - 43 :
Sequencing by Synthesis
DNA Polymerase basic_dna_5312 Elapsed Time: * 0.837 sec
EXIT FROM EXSAN
A B O U T E x S a n
ExSan is essentially a spreadsheet tool built on a novel data structure,
fully coded in C++11 conceived using Object Oriented Technology,
console based and capable of handling large matrices, for instance in
Image Processing tasks, Text Mining.
It is used for a variety of applications including Pattern Recognition,
Artificial Intelligence, Financial Derivatives Pricing , Digital Forensics
Expertise: Audio, Image & Video and more general Numerical Computing.
From the downloadable file extract executable EXSAN to your desktop.
The very first time ExSan is executed it creates a default input/output
directory c:\exsan
All data files included must be extracted to c:\exsan\exsan_data
The program you are executing uses ExSan as programming tool
Address your request/comments/un-expected results/flaws/errors to:
exsan.plusplus@gmail.com include corresponding c:\exsan\exsan_out(txt) + comment.
This file records the ExSan session.
Thu Jul 23 09:53:12 2015
exsan.plusplus@gmail.com https://twitter.com/#!/ExSan_com
JOB: basic_dna_5312
Data File: c:\exsan\exsan_data\DNA_FA_0001.txt
1st_line TAAACAAGCAGTAGTAATTCCTGCTTTATCAAGATAATTTTTCGACTCATCAGAAATATCCGAAAGTGTTAACTTCTGCGTCATGGAAGCGATAAAACTC
size strand 100
total strands 1000
last_line B@DFEFFFGEGGGFGHHHGGFGFGFIHGEGEHGHHGHGGEHBHF@HCIHEHEGHGGGCFGGBHHIHHGHFHHFGDJJDGIFHGKHGGFG>GHDFIFGEED
size strand 100
Basis
WORKSHEET A[10, 10] CHAR
A B C D E F G H I J
>------------------------------<
1: T A A A C A A G C A
2: G T A G T A A T T C
3: C T G C T T T A T C
4: A A G A T A A T T T
5: T T C G A C T C A T
6: C A G A A A T A T C
7: C G A A A G T G T T
8: A A C T T C T G C G
9: T C A T G G A A G C
10: G A T A A A A C T C
<------------------------------>
WORKSHEET B[10, 10] CHAR
A B C D E F G H I J
>------------------------------<
1: A A C A A G C A G T
2: A G T A A T T C C T
3: G C T T T A T C A A
4: G A T A A T T T T T
5: C G A C T C A T C A
6: G A A A T A T A C G
7: A A A G T G T T A A
8: C T T C T G C G T C
9: A T G G A C A C G A
10: A A A A A C T C C C
<------------------------------>
WORKSHEET 999[10, 10]
A B C D E F G H I J
>------------------------------<
1: G C G G C G C A A C
2: C T G T G A C G A C
3: A A A T C T G C T C
4: A A A T T T A T G C
5: G C G C T T C G A T
6: A A A A A T G A T T
7: G G C G T A T C C A
8: A C C T G C A G A G
9: T T T T A T C G C T
10: T C C A T G A C G C
<------------------------------>
WORKSHEET 1000[10, 10]
A B C D E F G H I J
>------------------------------<
1: C G A G C T G C G C
2: A A G G A T A G G T
3: C G A A T T T T C T
4: C A T T T T C C G C
5: C A G C A G T C C A
6: C T T C G A T T T A
7: A T T C G T A A A C
8: A A G C A G T A G T
9: A A T T C C T G C T
10: T T A T C A A G A T
<------------------------------>
Qualities
WORKSHEET A[10, 10] PIX
A B C D E F G H I J
>------------------------------<
1: 33 31 35 37 36 37 37 37 38 36
2: 38 38 38 39 36 39 38 39 38 39
3: 38 38 38 38 39 40 37 38 37 40
4: 37 39 40 34 37 38 39 38 39 38
5: 41 38 39 37 38 39 38 40 39 36
6: 39 38 38 39 41 38 37 36 37 39
7: 38 39 36 38 38 39 39 38 39 40
8: 37 38 37 38 35 40 37 38 38 37
9: 38 38 38 37 39 38 38 38 39 38
10: 38 38 32 38 40 37 38 38 34 38
<------------------------------>
WORKSHEET B[10, 10] PIX
A B C D E F G H I J
>------------------------------<
1: 28 31 31 34 36 33 37 31 33 38
2: 33 38 21 38 37 16 36 27 15 19
3: 34 18 36 22 36 13 24 38 28 39
4: 27 39 25 39 39 26 39 33 39 26
5: 38 21 24 37 22 11 22 35 38 7
6: 7 36 38 23 32 23 11 12 20 12
7: 23 11 30 11 11 11 32 36 29 34
8: 11 33 30 11 11 11 21 19 3 32
9: 34 6 10 6 28 6 10 19 6 18
10: 9 19 10 36 18 17 17 9 6 7
<------------------------------>
WORKSHEET 999[10, 10]
A B C D E F G H I J
>------------------------------<
1: 14 31 35 34 31 33 37 35 38 33
2: 38 31 38 21 36 29 32 33 38 39
3: 38 37 37 38 35 40 38 38 37 37
4: 36 39 37 35 39 38 11 37 33 36
5: 38 34 36 35 31 39 38 37 39 36
6: 32 36 35 39 38 38 22 33 37 32
7: 23 22 30 38 22 30 37 36 35 37
8: 39 29 35 38 21 40 33 38 38 37
9: 19 34 38 29 34 38 38 36 35 35
10: 38 38 38 17 18 24 30 34 26 31
<------------------------------>
WORKSHEET 1000[10, 10]
A B C D E F G H I J
>------------------------------<
1: 33 31 35 37 36 37 37 37 38 36
2: 38 38 38 37 38 39 39 39 38 38
3: 37 38 37 38 37 40 39 38 36 38
4: 36 39 38 39 39 38 39 38 38 36
5: 39 33 39 37 31 39 34 40 39 36
6: 39 36 38 39 38 38 38 34 37 38
7: 38 33 39 39 40 39 39 38 39 37
8: 39 39 37 38 35 41 41 35 38 40
9: 37 39 38 42 39 38 38 37 38 29
10: 38 39 35 37 40 37 38 36 36 35
<------------------------------>
Total counter = 100000
n_A = 28426 n_C = 21890 n_G = 19147 n_T = 30531 n_N = 6 total: 100000 ***n_GC = 41037
% A: 28.43 C: 21.89 G: 19.15 T: 30.53 N: 0.006
check-sum-> 1
Qualities min = 0 max = 43 range: 43
delta_Q: 43
Histogram of Qualities( 0 <--> 43 ):
0.046% 0 - 4 :
0.552% 4 - 8 :
1.472% 8 - 12 : *
1.487% 12 - 17 : *
1.861% 17 - 21 : *
2.231% 21 - 25 : **
9.051% 25 - 30 : *********
63.4% 30 - 34 : ***************************************************************
19.83% 34 - 38 : *******************
0.07% 38 - 43 :
Sequencing by Synthesis
DNA Polymerase basic_dna_5312 Elapsed Time: * 0.837 sec
EXIT FROM EXSAN
A B O U T E x S a n
ExSan is essentially a spreadsheet tool built on a novel data structure,
fully coded in C++11 conceived using Object Oriented Technology,
console based and capable of handling large matrices, for instance in
Image Processing tasks, Text Mining.
It is used for a variety of applications including Pattern Recognition,
Artificial Intelligence, Financial Derivatives Pricing , Digital Forensics
Expertise: Audio, Image & Video and more general Numerical Computing.
From the downloadable file extract executable EXSAN to your desktop.
The very first time ExSan is executed it creates a default input/output
directory c:\exsan
All data files included must be extracted to c:\exsan\exsan_data
The program you are executing uses ExSan as programming tool
Address your request/comments/un-expected results/flaws/errors to:
exsan.plusplus@gmail.com include corresponding c:\exsan\exsan_out(txt) + comment.
This file records the ExSan session.
